Cytotree
The CytoTree runs on several platforms, such as UNIX, Windows, and macOS, and provides an up-to-date, feature-rich and readily scalable workflow. In this tutorial, we will present: How to install CytoTree. A quick start tutorial of CytoTree. Detailed functionality description of CytoTree. WebMar 22, 2024 · CytoTree provides multiple computational functionalities that integrate most of the commonly used techniques in unsupervised clustering and dimensionality …
Cytotree
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WebNov 10, 2024 · Visualization of 2D data of CYT. addMetaData: Add meta information of CYT buildTree: buildTree changeMarker: Change marker used in the calculation of CYT constraintMatrix: constraintMatrix correctBatchCYT: correctBatchCYT createCYT: create a CYT object CYT-class: Class 'CYT' CytoTree-package: Visualization and analyzation for … WebThis file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
WebCytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and dimensionality reduction to … WebCytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and dimensionality reduction to trajectory reconstruction and pseudotime estimation. It offers complete analyzing workflow for flow and mass cytometry data. Author: Yuting Dai [aut, cre]
WebNov 8, 2024 · CytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and … WebPackage ‘CytoTree’ January 13, 2024 Type Package Title A Toolkit for Flow And Mass Cytometry Data Version 1.8.0 Date 2024-06-19 Description A trajectory inference toolkit …
WebCytoTree provides multiple computational functionalities that integrate most of the commonly used techniques in unsupervised clustering and dimensionality reduction and, more importantly, support the construction of a tree-shaped trajectory based on the minimum spanning tree algorithm. A graph-based algorithm is also implemented to …
WebNov 2, 2024 · High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and … sonc fall tournamentWebMar 22, 2024 · CytoTree represents a versatile tool for analyzing multidimensional flow and mass cytometry data and to producing heuristic results for trajectory construction and … small desk speakers for computerWebMar 22, 2024 · CytoTree provides multiple computational functionalities that integrate most of the commonly used techniques in unsupervised clustering and dimensionality … soncerae twitterWebCytoTree provides two functions that convert FCS les into an expression matrix, CytoTree::runExprsExtract and CytoTree::runExprsMerge. e two main steps that need to be implemented are compensation and ltration (also called gating). Compensation in the ow cytometry workow has always been necessary. e manual adjustment of soncerray bollingWebChapter 7 Structure of CytoTree. The CYT object is according to the R S4 object. The raw.data which consists of the imput matrix data information is required to build the CYT object. When running the CytoTree::createCYT function, log.data in the CYT object is the log-transformed matrix and is filtered according to the markers included in raw.data.The … sonc hackin fnfWebCytoTree is a valuable tool to build a tree-shaped trajectory using flow and mass cytometry data. The application of CytoTree ranges from clustering and dimensionality reduction to … son chaeyoung waist sizeWebNov 10, 2024 · Calculate t-Distributed Stochastic Neighbor Embedding in CYT. addMetaData: Add meta information of CYT buildTree: buildTree changeMarker: Change marker used in the calculation of CYT constraintMatrix: constraintMatrix correctBatchCYT: correctBatchCYT createCYT: create a CYT object CYT-class: Class 'CYT' CytoTree … son chaeyoung shirt